Basic Information | |
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Taxon OID | 3300005739 Open in IMG/M |
Scaffold ID | Ga0076948_1036090 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14046 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (58.54%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000345 | Metagenome / Metatranscriptome | 1253 | Y |
F000744 | Metagenome / Metatranscriptome | 909 | Y |
F004546 | Metagenome / Metatranscriptome | 433 | Y |
F004898 | Metagenome / Metatranscriptome | 419 | Y |
F032098 | Metagenome / Metatranscriptome | 181 | Y |
F034149 | Metagenome / Metatranscriptome | 175 | Y |
F036207 | Metagenome / Metatranscriptome | 170 | Y |
F048268 | Metagenome / Metatranscriptome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0076948_103609010 | F000744 | N/A | MMTETQINLNVHEIGVILSALQLLDLSEERIIAREYGSVPALYNKLYSVYEQMDSSQTGLRNDVVPSF* |
Ga0076948_103609011 | F048268 | GAG | MQLSTQSISKIADALKPAVIDYVSMDERFVEILQTTIIEGIQDTMGDMNEDLLFELGMLIFDRIELK* |
Ga0076948_103609017 | F004898 | GAGG | MNSVELSELIDEIREIELYDTDPADWMGYLDDDNHYVPDVELAY* |
Ga0076948_103609018 | F036207 | N/A | MFNFISGTIFGIIVTTIGFGPVAKFLDGVMFNLQKTTVEMNRPPLPPPH* |
Ga0076948_103609028 | F000345 | GGAG | MDEKQPNDFGKALQEWWDSDTFKEMQKANEEAKQRAVGKYFMLSEEDKLDMVQAICYIMCKAESEGCSHRGLQDALGIYPVGFWVDHLMDVHNSLWSYYHDKKQEQELKDDLDVLDNFLDSKD* |
Ga0076948_103609035 | F032098 | GAGG | VENSDFPYHTLDPTTSWYEWICYCEICHQLGIKDQPSVQRFMRYNAYLKEIGVK* |
Ga0076948_103609038 | F004546 | N/A | MEHTEEFPFDQFPYKLVHKEGKEVRKCYFQTEEHRQIHIDRYKLKKKDIKLSCKYD* |
Ga0076948_103609039 | F034149 | AGG | MSISQGLVMDADEEPGFEILHLSFRKQESEAFSGAPINYYIGNIVFRLTNEDAINRVKYYMEKNEELRVAPDKDLLDSYYEDLHFVFDDEEELDEEKDGEKYTPLQILNKNGIKEEDVFIRAYRRNMMPLHDFIRYHEKFGVYSMREYFQDTPVVRGIIQYLQDMKDGKENPSRTVYYEQFLNTLENLCWWWD* |
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