Scaffold Ga0076948_1029319

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1029319
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13697
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040597	Metagenome / Metatranscriptome	161	Y
F054848	Metagenome / Metatranscriptome	139	Y
F080024	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_102931917	F080024	AGGA	MSVIATLLKNKAPQSAWLVKVKDLASGEERYAAHTTLGAAKKTAVLYTNSMLDMDRTRLTWQQDEEQKVLGIQYLRAEVDA*
Ga0076948_102931925	F054848	AGGA	MTTASPQQAAALYSAGKSVVEVAQELGITYGKARKLISDSGTPIRNTSDRLKGKTRKNK*
Ga0076948_10293197	F040597	GAGG	MRKRNVAAGVWEIIDVQTGERVNKFRARKRADVDRALKMAELGLKRPASDFEARYLTDWEDIPSS*