Scaffold Ga0076948_1025262

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1025262
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13897
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F053106	Metagenome / Metatranscriptome	141	Y
F060726	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_102526228	F053106	AGGAG	MAKYYVKSGTLEVILSEENALEAAISGFLLTNKFDTIDEYFYVDERGHRDYISADPKTNVIATKSVVRAAGWELSREDDE*
Ga0076948_102526232	F000325	AGGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSDCDFLGNGCYAEQTEKMYPNVRPAGMQNVITERGRIRSMILDAMRQNKSIRWHERGDWFLNGELDLDYVANVTWACESILADGKTLPDMWFYTHIYDSRLVAFEKYMAVYASIHDANDKAEAVAAGFKLFAWCDSDMKIAPKRPKRKAAAEVWRQALPKLVIIDGDKYITCPEIRRGRGVVTCTPTKGSVDCNLCVRGLANVLFPSH*
Ga0076948_102526234	F006543	GGAG	MQKFSFNVDVVADTLDREVVVESIRECLSDALPGDVHASVKAGEVKAFSEQGYKVWRARVTGVTAEAAGDSANPKKSKTEKETVEA*
Ga0076948_10252625	F060726	GGA	MYRNVLLTDKEIALLKRIIGDTLHEKIVPEAKNLTIIHNRLREIKPLVSNNQFFNYGK*