NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076948_1015873

Scaffold Ga0076948_1015873


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1015873 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6034
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F022857Metagenome212Y
F053230Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0076948_101587310F022857N/AMESVVVPKITVSFAVDLEVEYDAFSGRTAQEMAELLQDKLDDLLPEVDRRVISICTSITSIDDN*
Ga0076948_101587314F001018N/AMSQITETKLNKLNVLKLYEHYDALERSLPLLTPESQDLARAELESCANLRSEKIDRIYYAMASHEDALERIKKESDLIAQAKRHHESQLRSLKGLLNWLRRSLPFDTNKITGRNYQFTFVKKKDLTVEVTSDPEFWSTEERTNYCIEEEVTTTKRTVVRSLSGEVLVDRTEPKTTIKIVPNLDAIRNAYQQGQHLPPGVKVLQEYSVRSKRIYDVREMELEASIDPGQFLPED*
Ga0076948_101587315F053230N/AMLEALTSFILPLAKDILMTAAAALLAYALNKLQAHFQSI*
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