Basic Information | |
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Taxon OID | 3300005739 Open in IMG/M |
Scaffold ID | Ga0076948_1015873 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6034 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (47.06%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001018 | Metagenome / Metatranscriptome | 804 | Y |
F022857 | Metagenome | 212 | Y |
F053230 | Metagenome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0076948_101587310 | F022857 | N/A | MESVVVPKITVSFAVDLEVEYDAFSGRTAQEMAELLQDKLDDLLPEVDRRVISICTSITSIDDN* |
Ga0076948_101587314 | F001018 | N/A | MSQITETKLNKLNVLKLYEHYDALERSLPLLTPESQDLARAELESCANLRSEKIDRIYYAMASHEDALERIKKESDLIAQAKRHHESQLRSLKGLLNWLRRSLPFDTNKITGRNYQFTFVKKKDLTVEVTSDPEFWSTEERTNYCIEEEVTTTKRTVVRSLSGEVLVDRTEPKTTIKIVPNLDAIRNAYQQGQHLPPGVKVLQEYSVRSKRIYDVREMELEASIDPGQFLPED* |
Ga0076948_101587315 | F053230 | N/A | MLEALTSFILPLAKDILMTAAAALLAYALNKLQAHFQSI* |
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