Scaffold Ga0076926_110175

Overview

Basic Information

• Taxon OID: 3300005738
• Scaffold ID: Ga0076926_110175
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1738
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020895	Metagenome / Metatranscriptome	221	N
F038472	Metagenome / Metatranscriptome	166	N
F097361	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076926_1101752	F020895	AGG	MIVHGITMPSIKAYEIVLEIDGQESCITLDDTFPAIDSWASACSMAVLMAKHIHPDKEVEFVSCAEYEADEYADIGYVYDAPVVLQ*
Ga0076926_1101755	F097361	AGTAGG	MLYLLFTPFAGYFAMLFTIVIMHSVGYDVRGVDTFTIWCIYIQIYVYLFVITKLKGKSDES*
Ga0076926_1101757	F038472	N/A	LNVTANRRKYMRYEMQNFIKMTKRKPSNVGQSGDRQKSARDEWKRARKIARQAKLNLRKSVA*