Scaffold Ga0076923_111294

Overview

Basic Information

• Taxon OID: 3300005735
• Scaffold ID: Ga0076923_111294
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2272
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010532	Metagenome	302	N
F010571	Metagenome	302	Y
F038195	Metagenome	166	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076923_1112941	F038195	N/A	MKLHKDFYEYKTIPFTYFKKVANRHDFKKEWVSVRCQEDIMKQQPHNVEIRRLKKNV*
Ga0076923_11129410	F010532	AGGAG	MNRTLYKKLEDICAREYIINKLSSSKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLTKSYEGIGMDEQALRQA*
Ga0076923_1112943	F010571	AGGAGG	MSMNTRQAIYIENLYEGFYEKHYKELSKTSDDVERIEQEASRLAEIDLDNFEMEG*
Ga0076923_1112945	F059441	AGGAGG	MKTWSSTITYSVFDMGRECETEEEYIEWVKETFILDHDIYLRDDEITNIQREELYNE*
Ga0076923_1112946	F003976	GGAGG	MSRVYNDYYFEKEDVLDTLDKLEMSVRFLNVWVNEPMGLENARYVLEKNANQEFNWFSRDMVKELLEEDDDE*