NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076923_107663

Scaffold Ga0076923_107663


Overview

Basic Information
Taxon OID3300005735 Open in IMG/M
Scaffold IDGa0076923_107663 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - control T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)840
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010878Metagenome / Metatranscriptome298Y
F102056Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0076923_1076631F102056AGGAGGMNKEFEKELVELLNKYYSTNWDYVWEFIGDTIETKLWLGEEVDD
Ga0076923_1076632F010878AGGAGGMKIKAWHIGIVWDDDTEEALSDIPNWVATRVDEYLNELEEEYDE*
Ga0076923_1076633F003976GGAGGMSRTYNDYYFEKLDILDTLDKLDISVRLLNVWVNEPEGLENARYILEKNANRKFNWFDRNMVKELVEEVI*

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