Scaffold Ga0076919_1005386

Overview

Basic Information

• Taxon OID: 3300005731
• Scaffold ID: Ga0076919_1005386
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1730
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → M → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F034344	Metagenome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076919_10053862	F005537	AGAAGG	MSDNNIKFMNNLDKLLHEKQGDYGHFDHTSYAMVGMMEKYLTIHNNKTVKVPLKFFGLFMIFLKCWRVMQSDKYKADSFNDINGYTELLRRLVVDENKTKR*
Ga0076919_10053867	F034344	AGAAGG	MFVPVKDKLDKLVALTPDDQEKLSYYKSIVPLMIANCHKAHQTIPGYDKCKPEVEAFKWFDGINIPVHGYID