Scaffold Ga0076946_122964

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0076946_122964

Scaffold Ga0076946_122964

Overview

Basic Information
Taxon OID	3300005730 Open in IMG/M
Scaffold ID	Ga0076946_122964 Open in IMG/M
Source Dataset Name	Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Norwegian Sequencing Centre (NSC)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1647
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location
Location Name	Fredrikstad, Norway
Coordinates	Lat. (^o)	59.185359	Long. (^o)	10.970104	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038199	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076946_1229644	F038199	GAGG	MIQYTQAEFLQIIKQYNSTDRKVIKANLKRIMDIYNIKPADIIALGYSHRNVYAWTNKSTNNIPMFEQALHIAVYFDFSITEFLK*

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