Scaffold Ga0068861_100055841

Overview

Basic Information

• Taxon OID: 3300005719
• Scaffold ID: Ga0068861_100055841
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3012
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041831	Metagenome	159	Y
F103794	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068861_1000558411	F103794	N/A	KVEAPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE*
Ga0068861_1000558413	F041831	GAG	MPVNPFGNVRQVIGRAFRWPVEVIGAEWARMAPRTRRLALALLAVIVGLVVLGGSYLTFSNISTMREENDAIREALGEISKHHDEYLDAKTRNAVQEARIGNDPPQLTADVEAAARGENVQIAETNERQVAPAPGSRRYLEHDLDIKIREVDLQSLTKFMRRVETGPRFVFFTRVALKHRYSETDKLDAELTATAFEKVKDDKKKKAAEASKAAGKKE*