NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10367107

Scaffold Ga0078894_10367107


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10367107 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1303
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008494Metagenome / Metatranscriptome332N
F010398Metagenome304Y
F043399Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0078894_103671071F043399N/AMYYIDYPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCENNGID
Ga0078894_103671072F010398AGGAGMEISIEGVVEVNYHLVIDEDVFNECCEEAGLDPANFKKFTKAQWDELNPHLIQAVVDNEADIDYTEIHEQSTVFADTLTIDDSDKMTTVYYDTNRKVDSVEIL*
Ga0078894_103671074F008494N/AMTKTEVITMFMGAVDKYTKAIDKTAENNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLINAKREAEFELEVARANESRIKAEVDQIKYIIRALEVKEEA*

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