Scaffold Ga0078894_10367107

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10367107
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1303
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008494	Metagenome / Metatranscriptome	332	N
F010398	Metagenome	304	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_103671071	F043399	N/A	MYYIDYPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCENNGID
Ga0078894_103671072	F010398	AGGAG	MEISIEGVVEVNYHLVIDEDVFNECCEEAGLDPANFKKFTKAQWDELNPHLIQAVVDNEADIDYTEIHEQSTVFADTLTIDDSDKMTTVYYDTNRKVDSVEIL*
Ga0078894_103671074	F008494	N/A	MTKTEVITMFMGAVDKYTKAIDKTAENNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLINAKREAEFELEVARANESRIKAEVDQIKYIIRALEVKEEA*