Scaffold Ga0078894_10211783

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10211783
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1755
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F027179	Metagenome	195	Y
F043935	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_102117831	F027179	N/A	IMKFIYMADGLFLYETENGYIVTDQNDKILKQAKSHVTCSRYISKTLQSRRAAERYAIEKINQDQN*
Ga0078894_102117834	F002398	AGGTGG	MIPFLSILALSIEPIKNFVSLKTYISQNAQEHCKVYFIYDIPDFPRVNIIEKNRDAFFEYLDTIGIEHTQIGGYYYFRKKTL*
Ga0078894_102117835	F043935	N/A	MTKKEIEILDNEIQYLCNQYQDRIKDIRQVTGINTSYSFMKEAETIEYLYKCVLENRKHEKSNYFSCGTSGWHLIYLRSKKTYKKGEKFVIKIYFSFVETDTYE*