Scaffold Ga0078894_10166177

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10166177
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1989
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018539	Metagenome	234	Y
F099157	Metagenome / Metatranscriptome	103	Y
F099293	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101661774	F099157	AGGAG	MRYYDRLAEFERDGFDIIVDKSWEDIAIRDCFDDSCYDIRDMENKVNSGELDWFMLRVRVLVEGLELGSSYLGGCMYADAREVLKDGTAEDLIAEALDQARARVYPLYKRFAVLNEAIEQQGVTV*
Ga0078894_101661776	F099293	AGGAG	MSDYKQRLDNIMLQLQAIIDEEYEENDCIQTAFNALACALDDVVE*
Ga0078894_101661777	F018539	AGGAG	MSQAYKQAIFAQVAKAKLIYVKNKETYKIVIAFNVHKKVKDNGEIVHVFPTQAKCNYVSGDINYETLQKDTEYVLTQARKQLRTDNIEFV*