Scaffold Ga0078894_10162526

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10162526
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2011
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F035764	Metagenome / Metatranscriptome	171	Y
F061853	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101625261	F035764	AGG	MIDWLVNKLFWWTPLRNALIAEATFYNSLTRTINDPEAMKTASAFWDEGDGWRGWSIEGDKYYFNDVPEHDLMGVILSIEEMAKA*
Ga0078894_101625264	F061853	N/A	MNKKTITLIGLLVALVAVAYATYNSLSQLKDIDYDLFDTEEDEDD*
Ga0078894_101625267	F001176	GAG	VSDNGTGMTTPPNNQPSGAVTSQEATRKNPSQGKFKSGFSGPRPATKIDTNKHGIRRETVLGQKKTKPKKV*
Ga0078894_101625268	F001280	N/A	MCVECGCESVGSESGINMIPGGMLNVSRDGEAGLTLNMTATPEQRERFISGE*