Scaffold Ga0078894_10138567

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10138567
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2177
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031096	Metagenome / Metatranscriptome	183	Y
F054874	Metagenome / Metatranscriptome	139	Y
F081348	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101385672	F031096	AGGA	MITTLCGGSFELRTGRKWTHGISPFREREALKLRWEKVGPVGGRHFFEIDGGQYSAKTISPRIEGIQMHTEGF*
Ga0078894_101385676	F054874	GGAG	MVKESKGGVFAPADMPLIKNALLYYKDMLVKSEESERNVSVELFNVAALLHRINRIA*
Ga0078894_101385679	F081348	GGAG	MFKKVPYGVKVRVRGNDKDGFIAEYAINTFRFSPWLDDWSLISRYTHTPFTKYDTFPTFESAKEAAMAQYDSWINHYKREEETKRIAKSQSKVIWKHP*