Scaffold Ga0078894_10098820

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10098820
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2573
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004696	Metagenome	427	Y
F032282	Metagenome	180	Y
F059972	Metagenome	133	Y
F076068	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100988201	F004696	N/A	IKGLQDGKPKWAASAQLDEIRSAIKLLERYENITEQDIEDEDEYLKQVFESMPAKAQA*
Ga0078894_100988202	F032282	N/A	MSNSSIVHSIHSIDIEKYDSIEREREKVLADEEFQMWCKQYNIGSRVEVKDFRANELMQQYTNYPKWVASMY*
Ga0078894_100988203	F059972	N/A	MKLKELLLQMYEGHCERLPDETDEDYLQRCGNSMFSQNYTATQLSNIPNVMKHKLVVPIPTKSK*
Ga0078894_100988204	F076068	N/A	MLKESVYANAAENFGTPVGVAHIIGYKNKKQQIEEDGIESFNSIEGELQINAIISDAIELELYQELQRAIYRLKGNKRIKKETTIYNKAWKEITNNENYITKSGQIF*