Scaffold Ga0078894_10004464

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10004464
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10699
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001713	Metagenome	648	Y
F001799	Metagenome / Metatranscriptome	632	Y
F007203	Metagenome / Metatranscriptome	356	Y
F059761	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100044641	F001799	GGCGG	MTTHKQQMSTDKHLLAQWAKNLLNDDFFKEVIDNLKNQQISVIINTSAEECDRREDAYRHIKTIELITGHLEGLASETVIKEKKWKIL*
Ga0078894_1000446417	F059761	AGG	MTELLKAFGWRKRQANEVVDKIRNDTLEEVAKEIEKFDMFGKDTISSFTVVIRNMKACPPCYGNCNQGRNCPARNTCLMKK*
Ga0078894_1000446418	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMSCERDEEGTYNENIEDVIYQKVSLMGIFTEAQFRELEIEGCMRLSKHILEEADHAKIMAYEAE*
Ga0078894_100044645	F007203	GGA	MYVQMQGVNLAPKVKELEKRVEMLENMVKELQLDKPRMGRPPKDKHGTERVNVDNPSRD*