Scaffold Ga0066842_10001977

Overview

Basic Information

• Taxon OID: 3300005658
• Scaffold ID: Ga0066842_10001977
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF86A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4563
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007121	Metagenome / Metatranscriptome	357	Y
F011446	Metagenome / Metatranscriptome	291	Y
F021857	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066842_1000197711	F007121	N/A	LLFGVTTPATGNWQIVLQDKLQEPTLDKLIDWVPEEVPRTVSFYFDTDGDGKFDLKIAYSLIEAYPCNAYNCVNMITDNGDHWILPAPGMNYFVIKKWTLYRYADDEDWRGVYITQQWIFKHPYYDDWLKEKFYPLWPEQMQ*
Ga0066842_100019773	F021857	GGAGG	MTIIEKKVVKIKVKSRFCAVCDSKFRWQCKCPNNKVMARQVKKSFHEGKRYRGKRALEYCYDTEKKDAKL*
Ga0066842_100019777	F011446	AGGAG	MEAMILSWASTQSWWGIATTVIVIANGITMTLKDRYAENIPIIGKIWPILNWLSLNIANNKNDDK*