Scaffold Ga0079204_10077416

Overview

Basic Information

• Taxon OID: 3300005654
• Scaffold ID: Ga0079204_10077416
• Source Dataset Name: Porphyra Blade Metagenome Co-Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1685
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: USA: Blueberry Hill, Maine
• Coordinates
  • Lat. (^o): 44.342
  • Long. (^o): -68.065

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040447	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079204_100774161	F040447	N/A	AGPQDGTTAKNMKFSFGGTPMFSGKEPLEVFSWTRKFFKACDEKDVSEGMGLYLIPNFLAGDSEARFTRHLPGSDIAGGRGSLGSFPAAVNWFFSTYTEPHSLKLAQDKFSRAALVDNEGVYDFAARLRSFAELCGNIHSVGTMKQQLIQGIPEYLRTDAFVYNSSERSYQELSTNVAGKDRAAKDTVALAIRGSPGGSSRNGQTSTGPQGLSVNQLHTPWGEDDTSTYDTVAVLPSGTSRFCTAGAAPYARREAPTGPPLCFMCWMRGHRVPDCKILTHKKRELVKAARSTFLRQRNAGAGAASDCTSVVALVWDDLLGGAESTKTREGDTLLVTTPAKGRRGARNA*