Scaffold Ga0056133_10547998

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0056133_10547998

Scaffold Ga0056133_10547998

Overview

Basic Information
Taxon OID	3300005653 Open in IMG/M
Scaffold ID	Ga0056133_10547998 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	544
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Max Planck institute for Marine Microbiology, Germany
Coordinates	Lat. (^o)	51.321602	Long. (^o)	12.394572	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032146	Metagenome	180	Y
F032147	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0056133_105479981	F032147	GGA	MKAKIRNLHISKIRFLFPVSFTIEHKVCSAELYLYVRFGANLLKNAVTTA*
Ga0056133_105479982	F032146	N/A	VEKCGHQSLKTAKIGIRTPLKSANYFRFVFQTTDVEATTFVSRMQNFVKIGKDLWT*

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