Scaffold Ga0056133_10000504

Overview

Basic Information

• Taxon OID: 3300005653
• Scaffold ID: Ga0056133_10000504
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9902
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (26.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003860	Metagenome	464	Y
F005229	Metagenome	407	Y
F029995	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0056133_100005041	F005229	N/A	MVSIAVSKMSMTELISVVPGMQVNGQYYRDALLSQQMLPAIKHVASATFVFQQDNASSHRASYSKKRRTQLVLISGHQTAHT*
Ga0056133_1000050418	F029995	N/A	MFNVSALLVNDALKPATPLTNGAISETLGQFSPLSDDRLLQLVDCRESSTLIDHLSKATQTA*
Ga0056133_100005042	F003860	N/A	MQQRVYEYRMNSVDELKQRLIEVCNSQQQNVIDAAINEWRKQLRACMHADGQHIEHSLQAHVTNGSYGQLKYK*