Scaffold Ga0056135_10005844

Overview

Basic Information

• Taxon OID: 3300005652
• Scaffold ID: Ga0056135_10005844
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1a BELIZE.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4588
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019085	Metagenome	231	Y
F052379	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0056135_100058441	F052379	AGTAG	MFGVQFEPQSGKARPPTKELFHNDSYAHDDHGDNPGQETQGSTVSSKNCDPCWNLD*
Ga0056135_100058449	F019085	N/A	MNIHVRACVHSVNHQHAHMISDGPASIDDVLVKVKTSLHQVFLQVINVMNLCFMHTLLYNTP*