Scaffold Ga0079202_10014665

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079202_10014665

Scaffold Ga0079202_10014665

Overview

Basic Information
Taxon OID	3300005651 Open in IMG/M
Scaffold ID	Ga0079202_10014665 Open in IMG/M
Source Dataset Name	Marine algae microbial communities from Blueberry Hill - Blueberry Hill, Maine
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3248
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	USA: Blueberry Hill, Maine
Coordinates	Lat. (^o)	44.342	Long. (^o)	-68.065	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091240	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079202_100146654	F091240	AGG	MRIIGAAGKSGRHVWPSVNMGGGGGWQVMLVAGREKVHFHGMPDRIDTCLASEIGQSQFWNGRIEENGAILEGQKNMKVYFSATRSFERLVFFP*

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