Scaffold Ga0077109_1130955

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0077109_1130955

Scaffold Ga0077109_1130955

Overview

Basic Information
Taxon OID	3300005645 Open in IMG/M
Scaffold ID	Ga0077109_1130955 Open in IMG/M
Source Dataset Name	Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	648
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water → Brackish Water Microbial Communities From Lake Sakinaw,Canada

Source Dataset Sampling Location
Location Name	Sakinaw Lake (SAK), BC, Canada
Coordinates	Lat. (^o)	49.682207	Long. (^o)	-124.005217	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F093357	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0077109_11309551	F093357	GGA	MERIIQEKMKNFEQAWQIKRFLAERGESISSLSRKLNRPFGSVANNIYGYRANAQLQGEIADFLGKPVAKLFGGAGPVRG*

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