Scaffold Ga0077109_1041922

Overview

Basic Information

• Taxon OID: 3300005645
• Scaffold ID: Ga0077109_1041922
• Source Dataset Name: Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1600
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water → Brackish Water Microbial Communities From Lake Sakinaw,Canada

Source Dataset Sampling Location

• Location Name: Sakinaw Lake (SAK), BC, Canada
• Coordinates
  • Lat. (^o): 49.682207
  • Long. (^o): -124.005217
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008235	Metagenome / Metatranscriptome	336	N
F040095	Metagenome / Metatranscriptome	162	Y
F079785	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0077109_10419223	F008235	GAG	MINYLKNLFKKPETTPVEQPKNNYYLAKYRANLSLSITYNLPDTNGYSYRQYDDVESDDNLVFLERKNKLIEEYQQIISNINEQLKDNSSEYIIVNKSFLFKKSDFVNAKITIKDNW*
Ga0077109_10419224	F040095	GGA	MXLXSRKNKEDLFDIFNIDISVPRIKYGTQPGNTWGNDYPTKVIDIHFNTKFVYRKDKTYWHFQLTLLGFGFSITRQTGY*
Ga0077109_10419226	F079785	N/A	MKYRIWSKLSNCYTYEPCYPGSSLHCASNYYLDTDGNIVDFITTIGGNQDDATKDMVNQEDYKIELCTNFKTTN