Scaffold Ga0077109_1027960

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0077109_1027960

Scaffold Ga0077109_1027960

Overview

Basic Information
Taxon OID	3300005645 Open in IMG/M
Scaffold ID	Ga0077109_1027960 Open in IMG/M
Source Dataset Name	Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2182
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water → Brackish Water Microbial Communities From Lake Sakinaw,Canada

Source Dataset Sampling Location
Location Name	Sakinaw Lake (SAK), BC, Canada
Coordinates	Lat. (^o)	49.682207	Long. (^o)	-124.005217	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018866	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0077109_10279602	F018866	N/A	VRSIYRQMDSQRHNKTHKKPFNDIENPVGEADTSFKNLLEDSAREAYCRPWHRIERGLRLNRLRIFIEEVGPQFTMTKDEKDAFFIFLQKALDKKLLNTLKIVNYDQETQRITIIRGLEIKRNPEGILKWVFSTKKPRADGTRKKKKDDIPSVSTHGEESTETKIEDEVNQ*

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