Scaffold Ga0074649_1010646

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1010646
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6475
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005491	Metagenome / Metatranscriptome	399	Y
F008022	Metagenome	340	Y
F009491	Metagenome / Metatranscriptome	317	Y
F030052	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_101064618	F005491	N/A	MSAFYRDTRFNGKLVRLEEVIQEATERAIQVIDDSLYELIGTSESNPYEFYLDYKEAFGHIVEELKKFHNVEE*
Ga0074649_101064622	F008022	N/A	MTTTELQAKIEALQAALDTKTQEQNAYRVQIDTLKKQLADLNKPKLTMAQFDELTELIEEGIGNFDFDDTDNYSIDFGLDYGGRVHCAAHEFDNADELAREICEKVYEMFAEADEDDNQENQD*
Ga0074649_10106464	F009491	N/A	MSNTIKTSQIKILKLNNNTYLPYQLHQLPKFFDKYTTDHFNLKGYCYINLNDHSDNFDLKNFKNRLTFNKDIHYTQKR*
Ga0074649_10106468	F030052	N/A	MDNIIDMNNKLKELEELLQTHDWYYGMSDDNYYYKQGRQQFEKIWELMDELKEGGYFTEVENLYDIYSPNV*