Basic Information | |
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Taxon OID | 3300005613 Open in IMG/M |
Scaffold ID | Ga0074649_1010646 Open in IMG/M |
Source Dataset Name | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6475 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
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Location Name | Greece: Etoliko Lagoon | |||||||
Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005491 | Metagenome / Metatranscriptome | 399 | Y |
F008022 | Metagenome | 340 | Y |
F009491 | Metagenome / Metatranscriptome | 317 | Y |
F030052 | Metagenome | 186 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074649_101064618 | F005491 | N/A | MSAFYRDTRFNGKLVRLEEVIQEATERAIQVIDDSLYELIGTSESNPYEFYLDYKEAFGHIVEELKKFHNVEE* |
Ga0074649_101064622 | F008022 | N/A | MTTTELQAKIEALQAALDTKTQEQNAYRVQIDTLKKQLADLNKPKLTMAQFDELTELIEEGIGNFDFDDTDNYSIDFGLDYGGRVHCAAHEFDNADELAREICEKVYEMFAEADEDDNQENQD* |
Ga0074649_10106464 | F009491 | N/A | MSNTIKTSQIKILKLNNNTYLPYQLHQLPKFFDKYTTDHFNLKGYCYINLNDHSDNFDLKNFKNRLTFNKDIHYTQKR* |
Ga0074649_10106468 | F030052 | N/A | MDNIIDMNNKLKELEELLQTHDWYYGMSDDNYYYKQGRQQFEKIWELMDELKEGGYFTEVENLYDIYSPNV* |
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