Basic Information | |
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Taxon OID | 3300005613 Open in IMG/M |
Scaffold ID | Ga0074649_1009299 Open in IMG/M |
Source Dataset Name | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7191 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (55.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
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Location Name | Greece: Etoliko Lagoon | |||||||
Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004134 | Metagenome / Metatranscriptome | 451 | Y |
F020114 | Metagenome / Metatranscriptome | 226 | Y |
F054801 | Metagenome | 139 | N |
Protein ID | Family | RBS | Sequence |
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Ga0074649_100929913 | F054801 | GGA | VTYKVRYTGLGPYKDKFEINQILTVKKMLPYAWHENFTFEEVEGEYHTIFFEDVKDT* |
Ga0074649_100929917 | F020114 | GGAGG | MTKPKHFKHISRAIDKHGVHHLDAIDEWGQHWYATMKQQEEPWLTYVQHWVLRTH* |
Ga0074649_100929918 | F004134 | AGGAG | MNQMTEWDEVAEVKFQEWFNEIYGVYSHRCEWFYGDCEVEDVKTRKDLMIKWLHSAYLSGYNVGRCSND* |
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