Scaffold Ga0074649_1008991

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1008991
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7391
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017135	Metagenome	242	N
F020172	Metagenome / Metatranscriptome	225	N
F064230	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_10089913	F017135	GAGG	VIPVISCPLPGGGNVLIKTQDIGGATTAKNPKECDVYVLGWAAEGITIDLCLDDFADIWVSALLDDGVGYEIVFTPDEVH*
Ga0074649_10089914	F064230	GGAG	MKSYLPQMKCTECYKIMVPQFKKEYPHKLDGWSCDCGNSEKAILRERQYTRADDGSKARAV*
Ga0074649_10089919	F020172	GAGG	MCTTVKRAMFCTRNGYKHIENLDKVCVLIGRLKGLTESEYLDLCAVSKLENARALEMAKHYPAH*