Basic Information | |
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Taxon OID | 3300005613 Open in IMG/M |
Scaffold ID | Ga0074649_1000994 Open in IMG/M |
Source Dataset Name | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 35462 |
Total Scaffold Genes | 67 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (25.37%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
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Location Name | Greece: Etoliko Lagoon | |||||||
Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F045767 | Metagenome / Metatranscriptome | 152 | N |
F060727 | Metagenome / Metatranscriptome | 132 | N |
Protein ID | Family | RBS | Sequence |
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Ga0074649_100099412 | F060727 | N/A | MKVKVRGEKYDVYGQFYIIPTIKVTHDKSLYGYYTIDLVWGKWGLSLTFE* |
Ga0074649_100099466 | F045767 | GAGG | LEKIVTMNIRESIRKNIQVLEEQKRITLTEEKIVKGRMSVLPKNVNKNSSIQVRKAFNGLFSEVRTLKSNGISQKVINENLISILTQMFDEEGERFVDTVKEKLAEYLKNKLQLTDVEQEILVQAIGNTEMDDVPELFNDPRFLANKITQAYSEDMGGKYSMMNIDNSQDMVKGLEDRFVDKLKPVIGDVNSNMELKLKGIRDNFLS* |
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