Scaffold Ga0074649_1000559

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1000559
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 49560
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (73.03%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030051	Metagenome	186	Y
F091647	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100055915	F091647	N/A	MREKIIRKAIKISYDKFKPNPYQRRYHYAFAFDGKKIIGFAKNNPIKVNAKAYRMGQKFNIQTYLDFPFSHAESHLISQLLDTYNSIRSDWSLVVLRINRQGKILLSKPCQNCQKILDAVGFKKVYWSIDKNNFATNNRIIELCQR*
Ga0074649_100055981	F030051	GGAG	MSDPNTVGNFLESLTTSMLSVIIALIGFWTTFIKNLVNRKDVEEMIHRCSQSSQYSQDRQYIMERLNSHKEDTNILFKALEKNTEVMTELKIQIATLGKTLEALENRIER*