Scaffold Ga0074647_1006233

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1006233
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2673
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F018479	Metagenome / Metatranscriptome	235	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10062332	F018479	AGGAG	MSSDIAGLVDRTYREYLEPMDDLQPYTLLQTIAPASDGINSTDTTLQFDGTLLTQEEEDVMEAGSIIEIGRELLLCKELDTVNDKVTVVRGVRGTTATAHSEGAVIKIAPPFPRQNVFDAVCDQIKNLYPTLFAVETKSITSKVGYIPLDGSTDNHLVAPIKAISQYTDFSAGSDETGTVFQGVATELVDLPNPFTYTDADGVEQTITYSNNGPDKVNAIQVYNVNAGHTVFVTFKKKFVTPSAESDLLATIGLEDEYEPIIMAGVAAQIIAGRDIPTATADYITDQLGTSNFPVNSASSIRNSLLQYQRALIQQARKDLRARYPEPVTVNKIAYT*
Ga0074647_10062333	F092017	AGGAG	MGMLLMFKEGRNLDIESIPDQPLEPSFPIVNPNDTANDGWFGLGAFGQAIFASQLVEEGAA*
Ga0074647_10062334	F003693	GAGG	MISKQALIDVSEDASNSLGVKTDGMLLCGIQFPATMTGTAVTFDFSLDNSTWADVVETDASAVSYTVSAGDVVRVDPSGWGFASNGYIRVTSNGTEAADRSIILHFRHS*