Scaffold Ga0070763_10089256

Overview

Basic Information

• Taxon OID: 3300005610
• Scaffold ID: Ga0070763_10089256
• Source Dataset Name: Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1537
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F013663	Metagenome / Metatranscriptome	269	Y
F014996	Metagenome / Metatranscriptome	258	Y
F029532	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070763_100892562	F013663	AGG	MNTRPDRDGQEQLRLLGAAWEEADQYWQDEVARQFDSGHWTPLVQQSRTYLEALRALMDLLETAERDTEF*
Ga0070763_100892563	F014996	GAG	VTKVHADIEALKGFHEALVRFRHVQRSVAERTGDEIEMTRASLAAKASHWQARLEQSQAEFDACRAGPGADCSEYARAVEQAGEWLEHIRRWQQRVDEAAGEFRGDAGAFWDLLQNDLPRAESLLLALIADLQAARRVQAGAS*
Ga0070763_100892564	F001698	AGGAG	MSGVINDIDALAEFRAHLMQFNRDLAENFATMRGHWRELGDVWRDDMYRLFGEALDEVTPGITAYLAATEGHEAHLAALIDRLREYLETGLGTGAGAGTSRTETSRG*
Ga0070763_100892565	F029532	N/A	DRDAVRRLAGFLAEAGEDGAATDLKIGLGKAVWATHREPLQDISNTMPPAAIGTAIDALRAVLLEVPEDYPDRNREVNRFLAPLAASVHAIMRAQEIAIPYGSRLEHIAAGGVAKYPDIVKLSLDEIAAEFEGLCNRPGNE*