NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070724_10458420

Scaffold Ga0070724_10458420


Overview

Basic Information
Taxon OID3300005609 Open in IMG/M
Scaffold IDGa0070724_10458420 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003647Metagenome / Metatranscriptome475Y
F090428Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0070724_104584201F090428N/AMSKKLITDELINKRLEAKGFGEKQINDEDLAKEAVLKHFGVEFTDDYSSSADFYIYEESTAD
Ga0070724_104584202F003647N/AMVMCEWTLADIKNRASNKAFAKVTVLSLDIETYKEDLRTGNIGGVTYDEFKQIITGYETELQIWNYITELIEKQ*

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