Scaffold Ga0070762_10004287

Overview

Basic Information

• Taxon OID: 3300005602
• Scaffold ID: Ga0070762_10004287
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6864
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002142	Metagenome / Metatranscriptome	590	Y
F011499	Metagenome / Metatranscriptome	290	Y
F034660	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070762_100042873	F011499	GGA	MTVVHPLDLTHFQAFLLFAVVISVAFGFLGRRRPKDRMKYILWSFFLFLLVGIGVGWAMFPFSR*
Ga0070762_100042875	F002142	GAGG	VKKSLGLFAALLLGASISPAGPQPQAGTIISQNSVACGAKKSKKKDIDILCQQYVVRSGATDFTIRQPKPSNETLIPINTPVEFSLDKNKMKFKANGKSFEFLVVAQAAATPAAP*
Ga0070762_100042878	F034660	GGAGG	MFEAPVDKQESKGSTGRIGVAILVLLVIAGVIYYLSSKQSPKQAAPAAAAPSAPADPVHDLKIVRVTMNKDPMGTTAVWLVTLQNKSTAYTYSNIRYETNYIGADDKPIVVNQGSIADSFSPGDEHNSQIRDTLYPNGTAWYKFKIVDAKASVH*