NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066706_11216258

Scaffold Ga0066706_11216258


Overview

Basic Information
Taxon OID3300005598 Open in IMG/M
Scaffold IDGa0066706_11216258 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)572
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004084Metagenome / Metatranscriptome454Y
F022066Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0066706_112162581F004084GGAGGMPDVEATARMAVPDHVSRVARLRLSSLGLVSMLIIQFILGMIYSLYGTGPTATKSVGMFSSPVLALHVILFFLLVIAAVGQLIRAFGARHRLTLWMSALGLLGILAAGFAGIGFIGNGDDGASLGMSLAFAVAL
Ga0066706_112162582F022066AGGVRSVLTRPRASAGEQKTPGRWLLLVGLGAFALALGLYVIY

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