Scaffold Ga0070761_10000978

Overview

Basic Information

• Taxon OID: 3300005591
• Scaffold ID: Ga0070761_10000978
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18019
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081262	Metagenome	114	Y
F100517	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070761_1000097811	F100517	GGAGG	MHHTARGSVLFSVAAGLLISSLPAHAQTETNVGIAAVSAGGIFGLGGHGSYGASLADPVSKYLMPFIDFSYSPLTSYAFTYGANLTGKGLYTSSLVDVNGGVKVRFTSKRDWVPYIGVGVGLLRLSSTTATSGFSTTATVNTSRDELAGNVSAGGLYYVTPHVGFEIEVKGYMAQQNRFGRASVGVFYQFP*
Ga0070761_1000097815	F081262	N/A	MSGLHTIVMGCGVAGICWAARCTTVADPAVLREYDDYVAAAERRMPARFDSGELAWVPAPALREAAARLADGKLVRWNIADAVVNRRIAGQNGTVIHWIGAIRIPGATLAELQSVLGDYDHYDRIYHPIVSACQAKRVGEGPNAIYDVTIGLRSAFRFVSLFPQHYAFQVKGRIQRMDANLAEPSALRVHLAASEIRESDSGEPGRADFLEPYRDHGIMWALNAYWRARRQGADIYLEFESITLARSVQAFVCTLGFVPVPKAIVSAAMESLPVDTLTVILEATRAECQRRASR*