Basic Information | |
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Taxon OID | 3300005590 Open in IMG/M |
Scaffold ID | Ga0070727_10510820 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 672 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Coast | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003647 | Metagenome / Metatranscriptome | 475 | Y |
F005817 | Metagenome / Metatranscriptome | 389 | N |
F090428 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070727_105108201 | F005817 | N/A | IITMRSNLLSRLKPEFKQGLEDNKTKYPASIHDLEFVLGQLTFYNDLTVNQVLNLFLFSDMEYRDRKSFDWRFGEDVFEIENNVS* |
Ga0070727_105108202 | F003647 | N/A | MVMCEWTLADVKNRASNKAFAKQTILKLDIEGYKQELKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ* |
Ga0070727_105108203 | F090428 | N/A | MSKKLITDELINEMLEARCFGEKQINDEDLAREAVLNHFNVEFTDDYSSSADFYIYEESTAD |
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