Scaffold Ga0049082_10102261

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10102261
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1004
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F007519	Metagenome / Metatranscriptome	349	Y
F034467	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_101022612	F034467	AGGAG	MKEEIKYSSRAIPLRGCNHPKFKYLSAAATDIRRTFRKARLLIRLTKGAAYESRT*
Ga0049082_101022614	F006110	GGAGG	MPRPKPPEKLIGRQVRMSDRQWIIFNHFGGAQWLRELLDKKDPFPKKYYEGLKNDNRN*
Ga0049082_101022615	F007519	AGGA	MTTGIEYLKPEQKKKGRGFGKKPALFCTSLRLTKDVMDYFNTNYAYTKQAKMREVLTEYVNNQTGNKS*