Basic Information | |
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Taxon OID | 3300005584 Open in IMG/M |
Scaffold ID | Ga0049082_10082308 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1129 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024058 | Metagenome / Metatranscriptome | 207 | N |
F024954 | Metagenome / Metatranscriptome | 203 | N |
F056412 | Metagenome / Metatranscriptome | 137 | N |
F086551 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0049082_100823081 | F056412 | N/A | EILIANLEKASADLKKANEETAKRIDQIFEKYQEKVSLAHHNCMMVNEKQIEEIACNSAEIC* |
Ga0049082_100823082 | F024058 | N/A | MNKMINWNFHRRQMRENMRKNMDTTESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGIDKDKVGTINLNNAKLVKENK* |
Ga0049082_100823083 | F086551 | AGGA | MITINKELTTDENTFRYSHERLLVKIFPSTIGWKTMTATAEILEGEDKGKWTTIYLRSGLYNVDTGSLVWYR* |
Ga0049082_100823084 | F024954 | N/A | MKFNSKKYLAKITKCDKLNSMKDKEMKNIIESLVVGKYYQIKNHIAICEMLNSTSNKKCLSRISGVGSVIAFYDEVTEVEMTPELLKECEARKNGTMSFIGDFNATSDYKGD* |
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