Scaffold Ga0049082_10002254

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10002254
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6175
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F053077	Metagenome / Metatranscriptome	141	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_1000225415	F076869	N/A	MITMFMINEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA*
Ga0049082_100022545	F000716	N/A	MEKFKKDIKNYQLTASKVYLQYEQDKYSEYQNYLYKRALYGLSSLNEKEILTMCSKKKQRIVNVYKRAQIVLNKLKQDITIAYSNFIFKTLFPNSPITEYLLSDTETDTAFKNILTFKDLDINKDKIITIFMSEGILPKNFLSLELPQNQLPRLKSE*
Ga0049082_100022547	F053077	N/A	MLYQLPNGKVIHLTVEQYLDLTDLDIQHLIALDAGDHMINPFSESAVNVNKKEKYYDFDYVSLDDDEIVNYSSDDTPFDDIIDLGDTLEK*
Ga0049082_100022548	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVIPSGTTCNYIPEEKPDYVFNVDYYNKWTNFNEGLLNKIRDYRKYN*