Scaffold Ga0049082_10000347

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10000347
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12779
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002501	Metagenome / Metatranscriptome	553	Y
F004006	Metagenome / Metatranscriptome	457	Y
F018177	Metagenome / Metatranscriptome	236	Y
F033808	Metagenome / Metatranscriptome	176	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_1000034711	F004006	AGGAG	MTDDVQGLVTSISLNQVLVAILEEHTKLTVPTSKFLEASSEEKELVIDYDENNLTFTFSLRLKD*
Ga0049082_1000034713	F018177	AGGA	MPSLDEFINKPEKVYKAELERIGGAKPCSKCDKDSVEYFWNAVETTMSWECPDGHKNTFVIK*
Ga0049082_1000034715	F071247	GGAG	MGSNNKIPFNPTVIKDGRIVRIRKDGTVKADLGPYKLKSKKAN*
Ga0049082_1000034716	F033808	AGAAGG	MEIFLFSGIAIGFLIGYPIGLFIDNLNKKENKKNGR*
Ga0049082_100003472	F002501	N/A	MQCQKCTGRVFVDRVFSQKLHIELFCIMCGKRWMINKETNAFAKWLEKKDRDHAKSYSISS*