Scaffold Ga0049085_10142967

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10142967
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 810
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006894	Metagenome / Metatranscriptome	362	Y
F060701	Metagenome	132	N
F080878	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_101429671	F060701	N/A	EQVEKATDWMKAMPRSVRKTLRLTKSRQPNVNTHDGVDDYLAVDCRIDTYHTQNLEFLDREFGFDEFNDIDDEHEGLTITSAMSEVETFEYLTGYDII*
Ga0049085_101429672	F080878	AGGAG	MGKVKVHYAPLGFEPQQEQQQQETANRNMFLLLCNGKPLALYDHRDTADYEMHICIQGDTHEGHENKYRIKTMGVVTHSYEEN*
Ga0049085_101429673	F006894	AGGAG	MHWNYRIVNTKTENAGEDWFCLQEVYYNKDNTPYAYCDPSTGSETMESLKDVWHMINEAITLPPLQE