Scaffold Ga0049085_10060313

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10060313
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1349
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011669	Metagenome	288	Y
F039482	Metagenome	163	Y
F054585	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_100603134	F011669	AGGGGG	MDDNEDYELANWMHLIAVCILGLFALVGIAGLAGFVWGML*
Ga0049085_100603135	F039482	N/A	MTDKLELTEHTVYILNGIKLLPHYTLPVFVTPGHTRLTPLKTWTVEQLKDAGAIESSAFLWPRHTLAAGGWHG*
Ga0049085_100603137	F054585	N/A	SEFEAAQDAAAAYRAARTEQERQQRFEAAAQAMCGENAAWKLLADGSVQCYTHRGFKTRKVTL*