Scaffold Ga0049085_10001282

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10001282
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9979
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017592	Metagenome	239	Y
F018719	Metagenome	233	Y
F019944	Metagenome	226	Y
F032530	Metagenome	179	Y
F034044	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_1000128210	F017592	GGAG	MYDDGDYGGIDVFMYWVTIVILFLMTTVFLGAVAGLIWALI*
Ga0049085_1000128211	F019944	N/A	MNTEEDEFKRIEREALRRAAEADDDDTQVYKKPWVGLTWKDMPEEYAGDSNFLSGARWAEARLKELNT*
Ga0049085_1000128212	F034044	AGGAG	MTKDDIILMSDASGIAYYGMGRDRNKFLHYLEAFANLVAAAEREACAKLCEAQGEYGWQQYADAIRARGQA*
Ga0049085_1000128220	F018719	N/A	MTPIFATWDRATLDKFAMDAYLRMQEQQEQLEQARLNLKDAIAAYRTLIKEPRRSGVED*
Ga0049085_100012829	F032530	AGGAG	MSDTPEMTDLVIETLVRQAIAKRQFWPESVWLAHSFEEAEANANLFAKTQLPMNNPERKRNLIRAYDRVKLSRETYHV*