Basic Information | |
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Taxon OID | 3300005583 Open in IMG/M |
Scaffold ID | Ga0049085_10000720 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12940 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (70.73%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.5046 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000684 | Metagenome / Metatranscriptome | 938 | Y |
F001507 | Metagenome / Metatranscriptome | 681 | Y |
F027847 | Metagenome / Metatranscriptome | 193 | Y |
F034573 | Metagenome | 174 | Y |
F093845 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0049085_1000072012 | F001507 | N/A | MQPTTIDELITEIYEDNFSHFEFIENMGGDCDCNLHMTMSTITKYWGE* |
Ga0049085_1000072015 | F000684 | AGGA | MTLGGLTYQIGDLFTTSKTGVTGRISNFTPINAKLTRVGLTLASGAHRFAMVKTSK* |
Ga0049085_1000072035 | F027847 | AGG | MTNPIMAVIDWIDENADYAPIGAFIGLGIALVLAFTLGA* |
Ga0049085_1000072038 | F093845 | AGGAG | MIPTTLTTTNGTTKKMSFDTKENVIKFIELYANALPIGTAINIDAPLIGIHSGWIQGKAKVTQ* |
Ga0049085_100007204 | F034573 | GGA | MYSIRRGHQTTKEEKAAQKISVLLSDFTLDLEKVGYYLARATPYLIYRRSLEVLESAQFQSETVEMNRIGYNHDKLF* |
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