Basic Information | |
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Taxon OID | 3300005582 Open in IMG/M |
Scaffold ID | Ga0049080_10030918 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1868 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F038155 | Metagenome | 166 | Y |
F051888 | Metagenome / Metatranscriptome | 143 | Y |
F056557 | Metagenome | 137 | Y |
F067677 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0049080_100309182 | F056557 | AGGAG | MYLDTGTIIGIMIALIASILTIGYSIYIIKTQNQIIQRMSDATATRRKMER* |
Ga0049080_100309183 | F038155 | AGGAG | MASNDRKNGKAYKKKPKVQKKTGKTIDGYSPAKLAIRAQKRSK* |
Ga0049080_100309184 | F051888 | N/A | MTSFALSSSTQSFSCSHENPATQLDTRDEYCAECNLLQEGSSVEHALNFQEINRSEQESEPAQSSDIPDEKGFNHQWTNRDGEFLDGVYDITNRLPSWLYLGKHVFPMFKQDELDAYLALPSWAVVCNKCHYQINKYMGCLTCEVCITTYSWSGIPFNYKIV* |
Ga0049080_100309185 | F067677 | GGA | MWDLFLVITKNRRGFTPALVLGEKSPSEKEITMNTFSFESARVNKVWDNKNRFNLGIQDSRAVAQPDGSFKSVFVASRIVTTSDPDHLEFIRKNLVDSTDCVVNIRGYMETKAGKKAGTWYDNMVITELTLA* |
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