Scaffold Ga0049080_10030918

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10030918
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1868
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038155	Metagenome	166	Y
F051888	Metagenome / Metatranscriptome	143	Y
F056557	Metagenome	137	Y
F067677	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100309182	F056557	AGGAG	MYLDTGTIIGIMIALIASILTIGYSIYIIKTQNQIIQRMSDATATRRKMER*
Ga0049080_100309183	F038155	AGGAG	MASNDRKNGKAYKKKPKVQKKTGKTIDGYSPAKLAIRAQKRSK*
Ga0049080_100309184	F051888	N/A	MTSFALSSSTQSFSCSHENPATQLDTRDEYCAECNLLQEGSSVEHALNFQEINRSEQESEPAQSSDIPDEKGFNHQWTNRDGEFLDGVYDITNRLPSWLYLGKHVFPMFKQDELDAYLALPSWAVVCNKCHYQINKYMGCLTCEVCITTYSWSGIPFNYKIV*
Ga0049080_100309185	F067677	GGA	MWDLFLVITKNRRGFTPALVLGEKSPSEKEITMNTFSFESARVNKVWDNKNRFNLGIQDSRAVAQPDGSFKSVFVASRIVTTSDPDHLEFIRKNLVDSTDCVVNIRGYMETKAGKKAGTWYDNMVITELTLA*