Scaffold Ga0049080_10022987

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10022987
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2177
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006894	Metagenome / Metatranscriptome	362	Y
F033000	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_100229875	F006894	GGAG	MPPVITGKQLREKFMFTWNYRIVNTKSMNAGEDWYCLREVCYNEKGKPTGHGAPCTGSEDMKSLKSVFKMMREAMKLPPLQEKDFK*
Ga0049080_100229876	F033000	AGCAGG	MEITSKLCKACRPKRKPTSKLTKKDLHNKVQTGDLNAYLAQNLLIVRQRDAHNKQGIASRKRWLKAWKERLREALEPIAKEIISARSAWLYARDKGYVDKAEFYFEYHGMLKHEKTHAEMSFMLKPSRPLSARWAYYISPFVFTRVREMWAALPPIYKQSRTPLLIRYRPDGDN*