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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005582 Open in IMG/M |
| Scaffold ID | Ga0049080_10018201 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2451 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007310 | Metagenome | 353 | Y |
| F008494 | Metagenome / Metatranscriptome | 332 | N |
| F013084 | Metagenome | 274 | Y |
| F103250 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049080_100182014 | F008494 | AGGAG | MTKQEVINMFMSAVGKYTVAIDSTADNNIKYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKISEQTKDLITAKREAEYVLETARANEARIKAEVDQIKYIIRALEVKDEA* |
| Ga0049080_100182015 | F103250 | AGGA | MEKIEINTKYGWASARIGRYSNGHLGIQLFQDGSPLARISANLIDTVLEPREFHFNSNDADSMKEDVLKSGHFEDTGKTNFSGFCEYPVFKLKDHVEVVEG* |
| Ga0049080_100182016 | F013084 | N/A | MGIMNVIGLMQEARETALYRGHNVKNWDVLGGDCYSLECKDCKMTVMVKEHPLPNEINVGGEAIALSCVKPEKKKRVKKM* |
| Ga0049080_100182017 | F007310 | N/A | MKVVYWNNSERWFNHHHYETLIEDITGFHLRESLCPETVKYMAKRLSDTKYQRRFKTLYTIYENEYNALVEKFNNQAENNGKIEVA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |