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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005582 Open in IMG/M |
| Scaffold ID | Ga0049080_10004740 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4731 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014726 | Metagenome / Metatranscriptome | 260 | Y |
| F016141 | Metagenome / Metatranscriptome | 249 | Y |
| F088525 | Metagenome / Metatranscriptome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049080_100047406 | F088525 | N/A | MTLPIRQSELNAAGFTGYFPALGYNERKQVAAMTLNRVGRSQDAFLLEINNVNAVRGITYVADVPPLRAGR* |
| Ga0049080_100047408 | F014726 | N/A | MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPSAGSTELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIANNDVDGFTRANQATLDTRALASDFLGGFVQAGVLNFSVGARPFATIVKPFQYAPPPGSPLDLANTYVNQISAAPVPAAGAAQVVGVPWVSQTKMRSNVYFTDPNILIEAEQQFNVKLSFPSGAVPVLATNVVNDSTNPLKVGVILDGLLLRPVQ* |
| Ga0049080_100047409 | F016141 | AGGA | MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQSRQGFTTGTNFTYRGYTALADSAMEKLQTVLNAGVLEISFAQKLYYQIARPFIQCPAGFGIDVQSLASSRTGNAAETQPEGTNWLARPDYRATAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |